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oupDryad is very pleased to announce more integrations from charter member and partner Oxford University Press Journals. Oxford University Press (OUP) publishes over 300 journals, many with the support of learned societies. As part of Oxford University, OUP brings a rich history of working with researchers.

OUP has integrated seven more journals with Dryad, all of which can provide secure links to data during the peer review process:

oup_covers

  • Behavioral Ecology – published on behalf of  The International Society for Behavioral Ecology, Behavioral Ecology publishes studies on the whole range of behaving organisms, including plants, invertebrates, vertebrates, and humans. Data publication is sponsored for Behavioral Ecology authors.
  • BioScience – published on behalf of the American Institute of Biological Sciences, BioScience has been publishing current research in Biology since 1964.
  • Environmental Epigenetics is an open access journal that publishes research in any area of science and medicine related to the field of epigenetics.
  • Toxicological Sciences is the official journal of the Society of Toxicology and publishes influential research in toxicology. Data publication is sponsored for authors for Toxicological Sciences.
  • Journal of Urban Ecology is an open access journal which covers all aspects of urban environments. This includes the biology of the organisms that inhabit urban areas, the diversity of ecosystem services, and human social issues encountered within urban landscapes.
  • Virus Evolution serves the community of virologists, evolutionary biologists and ecologists who are interested in the genetic diversity and evolution of non-cellular forms of life.
  • Work, Aging and Retirement reflects a broad community of professionals in the fields of psychology, sociology, economics, gerontology, business and management, and industrial labor relations.

Integration with Dryad ensures bidirectional links between the article and the data, and increased visibility for both. It also simplifies the process of data submission for authors. All data in Dryad is reviewed by professional curators who perform basic checks to ensure discoverability and proper metadata, and becomes freely accessible online once approved.

Oxford University Press is increasing its commitment to authors and to quality by making it easy to publish datasets alongside the manuscript, and by allowing data to be available during the peer review process.

We’re delighted to build our partnership with Dryad by integrating this set of OUP journals. Providing authors with a simple and user-friendly route to data sharing helps to increase transparency and reproducibility of published research, and ultimately must be good for science. We hope to integrate more of our journals in the near future.

– Jennifer Boyd, Senior Publisher Life Science Journals, OUP

To learn more about journal integration with Dryad and DPCs, contact us.

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We are delighted to announce the launch of a new partnership with The Company of Biologists to support their authors in making the data underlying their research available to the community.

COBNewLogo300dpiThe Company of Biologists is a not-for-profit publishing organization dedicated to supporting and inspiring the biological community. The Company publishes five specialist peer-reviewed journals:

The Company of Biologists offers further support to the biological community by facilitating scientific meetings, providing travel grants for researchers and supporting research societies.

Manuscript submission for all COB journals is now integrated with data submission to Dryad, meaning COB authors can conveniently submit their data packages and manuscripts at the same time. Dryad then makes the data securely available to journal reviewers, and releases them to the public if/when the paper is published.

We congratulate The Company of Biologists on taking this important step to help facilitate open data. To learn more about how your organization or journal can partner with Dryad, please contact us.

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UCP logoDryad is very pleased to announce a new partnership with the University of Chicago Press – Journals Division. Founded in 1890, Chicago is one of the oldest and currently the largest continuously operating university press in the United States. Chicago has recently integrated two additional journals with Dryad: Physiological and Biochemical Zoology (PBZ) and International Journal of Plant Sciences (IJPS) and is sponsoring Data Publication Charges (DPCs) for both titles. PBZ and IJPS join sister publication, The American Naturalist, a Dryad partner since its inception.

Integration with Dryad

  • Ensures bidirectional links between the article and the data, and increased visibility for both
  • Simplifies the process of data submission for authors
  • Takes advantage of Dryad’s professional curators who perform basic checks to ensure discoverability and proper metadata
  • Ensures that the data is freely accessible once the article becomes available online

Physiological and Biochemical Zoology publishes original research in the areas of animal physiology and biochemistry. PBZ focuses on ecological, evolutionary and behavioral aspects of morphological, physiological, and biochemical mechanisms. PBZ’s integration will allow authors to make their data available to journal editors during peer review.

The International Journal of Plant Sciences has been publishing plant science research since 1875. IJPS covers a wide range of topics including genetics and genomics, developmental and cell biology, biochemistry and physiology, morphology and anatomy, systematics, evolution, paleobotany, ecology, and plant-microbe interactions. IJPS will accept data from authors at the time of article acceptance.

The University of Chicago Press – Journals Division is increasing its commitment to authors and the STM field by making it easy to publish datasets alongside the manuscript, and by taking the extra step of covering the cost of data publication on behalf of authors. To learn more about journal integration with Dryad and DPCs, contact us.

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Dryad has been proud to support integrated data and manuscript submission for PLOS Biology since 2012, and for PLOS Genetics since 2013.  Yet there are over 400 data packages in Dryad from six difFeatured imageferent PLOS journals in addition to two research areas of PLOS Currents. Today, we are pleased to announce that we have expanded submission integration to cover all seven PLOS journals, including the two above plus PLOS Computational BiologyPLOS MedicinePLOS Neglected Tropical DiseasesPLOS ONE, and PLOS Pathogens.  

PLOS received a great deal of attention when they modified their Data Policy in March providing more guidance to authors on how and where to make their data available and introducing Data Availability Statements. Dryad’s integration process has been enhanced in a few ways to support this policy and also the needs of a megajournal like PLOS ONE.  We believe these modifications provide an attractive model for integration that other journals may wish to follow. The key difference for authors who wish to deposit data in Dryad is that you are now asked to deposit your data before submitting your manuscript.

  1. PLOS authors are now asked to provide a Data Availability Statement during initial manuscript submission, as shown in the screenshot below. There is evidence that introducing a Data Availability Statement greatly reinforces the effectiveness of a mandatory data archiving policy, and so we expect this change will substantially increase the availability of data for PLOS publications.  PLOS authors using Dryad are encouraged to provide the provisional Dryad DOI as part of the Data Availability Statement.
  2. PLOS authors are now also asked to provide a Data Review URL where reviewers can access the data, as shown in the second screenshot. While Dryad has offered secure, anonymous reviewer access for some time, the difference now is that PLOS authors using Dryad will be able to enter the Data Review URL  at the time of initial manuscript submission.
  3. In addition to these visible changes, we have also introduced an Application Programming Interface (API) to facilitate behind-the-scenes metadata exchange between the journal and the repository, making the process more reliable and scalable. This was critical for PLOS ONE, which published 31,500 articles in 2013.  Use of this API is now available as an integration option to all journals as an alternative to the existing email-based process, which we will continue to support.

PLOS Data Availability Statement interface

PLOS Data Review URL interface

The manuscript submission interface for PLOS now includes fields for a Data Availability Statement and a Data Review URL.

If you are planning to submit a manuscript but are unsure about the Dryad integration options or process for your journal, just consult this page. For all PLOS journals, the data are released by Dryad upon publication of the article.  Should the manuscript be rejected, the data files return to the author’s private workspace and the provisional DOI is not registered.  Authors are responsible for paying Data Publication Charges only if and when their manuscript is accepted.

Jennifer Lin from PLOS and Carly Strasser from the California Digital Library recently offered a set of community recommendations for ways that publishers could promote better access to research data:

  • Establish and enforce a mandatory data availability policy.
  • Contribute to establishing community standards for data management and sharing.
  • Contribute to establishing community standards for data preservation in trusted repositories.
  • Provide formal channels to share data.
  • Work with repositories to streamline data submission.
  • Require appropriate citation to all data associated with a publication—both produced and used.
  • Develop and report indicators that will support data as a first-class scholarly output.
  • Incentivize data sharing by promoting the value of data sharing.

Today’s expanded and enhanced integration with Dryad, which inaugurates the new Data Repository Integration Partner Program at PLOS, is an excellent illustration of how to put these recommendations into action.

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We are pleased to share below the text of a press release from Elsevier, announcing use of this image to direct viewers of online articles to the underlying data in Dryad. Dryad_web_banner_small_v4eSee below for sample articles; the image displays on the right sidebar, under Applications and Tools. This Dryad widget may be used by any publisher or journal to facilitate access to related publicly available data that authors have archived in Dryad.

Elsevier, a world-leading provider of scientific, technical and medical information products and services, and the Dryad Digital Repository, a leading archive for scientific and medical research data, today announced that they have implemented two-way linking between their respective content.

The Dryad Digital Repository provides facilities for archiving, discovery and accessibility of data files associated with any published article in the sciences or medicine, as well as software scripts and other files important to the article. Dryad is a nonprofit organization committed to its mission of making data publicly available for research and educational reuse. All data files stored in Dryad receive persistent, resolvable Digital Object Identifiers (DOIs) to ensure their proper citation.

Scientific and medical research datasets stored by Dryad for research articles published in 28 Elsevier journals can now be immediately accessed from the online articles on ScienceDirect and vice versa. This allows readers to easily find the background information they need in order to develop a deeper understanding of the article, and also helps to place the article in a larger context.

Dr. Todd Vision, Associate Director for Informatics at the National Evolutionary Synthesis Center and Principal Investigator on the primary NSF grant funding Dryad since 2008, said, “We are delighted to work with Elsevier in cementing the union between scientific articles and research data. Molecular Phylogenetics and Evolution was one of the first journals that joined the Dryad consortium and we would like to applaud them for recognizing that the integrity, rigor, and long-term impact of the science published by the journal is strengthened by archiving the associated data at the time of publication. We also believe that authors themselves will ultimately benefit, in the form of increased citations and other forms of professional credit, for making their data available for others to reuse.”

Dr. Derek Wildman, Editor in Chief of Molecular Phylogenetics and Evolution, a journal which has successfully incorporated and uses the reciprocal linking option between Dyrad and ScienceDirect, said, “DNA sequence data serves as the basis for the majority of the studies we publish. Dryad has done an excellent job in establishing a public archive for all types of data used in evolutionary biology. By making these data sets public and allowing for direct linking between a published research papers, scientists can more efficiently build on the work of their predecessors, strengthening scientific research enterprise. We see the incorporation of the two-way linking as a win for all parties.”

The first 28 journals hosted on ScienceDirect to feature the reciprocal linking option, displayed in the right hand sidebar of the online article page view, are:

  • Animal Behaviour
  • Applied Soil Ecology
  • Behavioural Processes
  • Biological Conservation
  • Comparative Biochemistry and Physiology. Part D, Genomics and Proteomics
  • Ecological Indicators
  • Environmental Pollution
  • Fisheries Research
  • Fungal Genetics and Biology
  • Gene
  • Hormones and Behavior
  • Infection, Genetics and Evolution
  • International Journal for Parasitology
  • Journal of Biomedical Informatics
  • Journal of Human Evolution
  • Journal of Informetrics
  • Marine Genomics
  • Molecular and Biochemical Parasitology
  • Molecular Phylogenetics and Evolution
  • Palaeogeography, Palaeoclimatology, Palaeoecology
  • Protist
  • Quaternary Science Reviews
  • Science of the Total Environment
  • Soil Biology and Biochemistry
  • Theoretical Population Biology
  • Toxicon
  • Trends in Ecology and Evolution
  • Virus Research

This type of linking between articles and data is one of the pillars of Article of the Future, Elsevier’s on-going program to improve the format of the scientific article. Elsevier collaborates with more than thirty data repositories, and is continually looking to collaborate with other relevant organizations.

View article examples on ScienceDirect:

R. Alexander Pyron, John J. Wiens, A large-scale phylogeny of Amphibia including over 2800 species, and a revised classification of extant frogs, salamanders, and caecilians, Molecular Phylogenetics and Evolution, Volume 61, Issue 2, November 2011, pp. 543-583, http://dx.doi.org/10.1016/j.ympev.2011.06.012.

Peter J. Unmack, Gerald R. Allen, Jerald B. Johnson, Phylogeny and biogeography of rainbowfishes (Melanotaeniidae) from Australia and New Guinea, Molecular Phylogenetics and Evolution, Volume 67, Issue 1, April 2013, pp. 15-27, http://dx.doi.org/10.1016/j.ympev.2012.12.019.

James Starrett, Marshal Hedin, Nadia Ayoub, Cheryl Y. Hayashi, Hemocyanin gene family evolution in spiders (Araneae), with implications for phylogenetic relationships and divergence times in the infraorder Mygalomorphae, Gene, Volume 524, Issue 2, July 2013, pp. 175-186, http://dx.doi.org/10.1016/j.gene.2013.04.037.

Mercy Y. Akinyi, Jenny Tung, Maamun Jeneby, Nilesh B. Patel, Jeanne Altmann, Susan C. Alberts, Role of grooming in reducing tick load in wild baboons (Papio cynocephalus), Animal Behaviour, Volume 85, Issue 3, March 2013, pp. 559-568, http://dx.doi.org/10.1016/j.anbehav.2012.12.012

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About Dryad

The Dryad Digital Repository is a curated resource that makes the data underlying scientific and medical publications discoverable, freely reusable, and citable. By providing a general-purpose home for a wide diversity of data types, Dryad benefits individual researchers, educators and students as well as a diversity of stakeholder organizations. Dryad is a member-based nonprofit organization incorporated in North Carolina, USA with users around the world.

About Elsevier

Elsevier is a world-leading provider of scientific, technical and medical information products and services. The company works in partnership with the global science and health communities to publish more than 2,000 journals, including The Lancet and Cell, and close to 20,000 book titles, including major reference works from Mosby and Saunders. Elsevier’s online solutions include ScienceDirect, Scopus, Reaxys, ClinicalKey and Mosby’s Suite, which enhance the productivity of science and health professionals, and the SciVal suite and MEDai’s Pinpoint Review, which help research and health care institutions deliver better outcomes more cost-effectively.

A global business headquartered in Amsterdam, Elsevier employs 7,000 people worldwide. The company is part of Reed Elsevier Group plc, a world leading provider of professional information solutions. The group employs more than 30,000 people, including more than 15,000 in North America. Reed Elsevier Group plc is owned equally by two parent companies, Reed Elsevier PLC and Reed Elsevier NV. Their shares are traded on the London, Amsterdam and New York Stock Exchanges using the following ticker symbols: London: REL; Amsterdam: REN; New York: RUK and ENL.

Media contact

Dale Seaton
Executive Publisher, Journals
Elsevier
+1 212 633 3862
d.seaton@elsevier.com
 
**Update: In addition to DOIs, the banner widget also works with PubMed IDs

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