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We invite you to register for the 2015 Dryad Community Meeting, which will take place on May 27th from 8:30am-4:00pm in Washington, DC.  The theme of this year’s meeting is “Taking a Closer Look at Data”, featuring a keynote presentation from Brian Nosek of the Center for Open Science.

The Community Meeting brings together researchers, librarians, publishers, funders and other individuals and organizations with a stake in the preservation and availability of the scientific and medical data associated with the published literature.

The program includes:

  • Dryad101, an introduction to the Dryad Digital Repository, including an overview of recent and upcoming developments
  • A Community Perspectives Forum in which partner journals and member organizations have an opportunity to share their experiences with data publishing.
  • The annual Dryad Business Meeting during which stakeholders can have a say in the governance of the nonprofit organization.
  • An Emerging Issues panel discussion all about the concept of “data review”.  This is an opportunity to hear about the experiences of the community with various forms of data review and to consider whether and how data review may be more widely adopted by Dryad’s community in the future to improve the value of data for reuse.

Our keynote speaker, Dr. Brian Nosek is Professor, Department of Psychology at the University of Virginia and Director, Center for Open Science. The Center for Open Science is a nonprofit technology startup that aims to increase openness, integrity, and reproducibility of scientific research. He is also co-founder of the widely known Project Implicit.

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There is no cost for registration, but space is limited, so please register early to ensure availability.

For inquiries, please contact Meredith Morovati (mmorovati@datadryad.org), Executive Director.

mm3We are delighted to introduce Meredith Morovati to the Dryad community. Meredith assumed the role of Executive Director in late 2014, and now that she has had a few months to settle in, we thought this would be a good time to check in with her and hear about her plans for the organization. Before joining Dryad, Meredith was the Vice President of Membership for the American Society of Echocardiography. Her experience prior to that includes stints in the publishing world. with Oxford University Press and Blackwell.

You’ve been on the job just over three months. What has been your impression of Dryad so far?
MM: Dryad is driven by a team of passionate and informed curators, developers, scientists and board members. I have been incredibly impressed by the staff’s commitment and how much they care about what they do. Everyone recognizes that Dryad is not only providing a service, but helping to shape the very landscape of data publishing, which is great to be a part of.

What excites you about this position and how does it build on your prior professional experiences?
MM: I am delighted to be able to apply my experience with academic boards and non-profit management to an organization that is positioned to grow dramatically in the near future. Data publication poses many challenges, yet has so much value to offer to researchers, publishers, librarians, and all of us who benefit from quality scientific and medical research. I am excited to be surrounded by informed and passionate individuals and to put my experience to work making data publication mainstream and sustainable.

What do you see as your top priorities for Dryad?
MM: I see an important role in removing barriers to the natural growth of Dryad’s service, and continuing to build relationships with its diversity of stakeholders. I believe there is a lot more work to be done talking to research communities in different corners of science and medicine on the imperative for data publication and how Dryad can be part of the solution. Dryad is integrated with many well-known journals and has some very prestigious and committed members. But there are many more to whom we need to make the case that data publication is valuable, achievable, and sustainable, and that Dryad is a key piece to that puzzle. Another big part of my job in the coming year will be to getting to know our members and hearing from them about how we can continue to improve the services we provide, both through the repository and through the other activities of the organization.

What can Dryad’s members and users expect to see in the coming year?
MM: First, I think members and users will be impressed with how much Dryad grows and diversifies this year. We are continually integrating manuscript and data submission with new journals, and the diversity of data packages we are now publishing can be seen by those we feature on nearly a daily basis on our social media channels. We are also pleased to be seeing a trend toward having a greater share of articles with data in Dryad from many of our partner journals.

Another trend that we hope will continue is more journals providing their reviewers with access to the draft Dryad data package. I believe that when reviewers pay attention to the data, it will naturally lead to higher quality, more reusable content.

As we grow, we are also working to increase the pool of sponsors, so that submission of data will be free to a greater share of those submitting data to the repository. There are a number of features in the works that will allow stakeholder organizations to see what has been published from the publications and researchers they care about, and how much attention and usage that data is getting, which we hope will make the benefits of sponsorship more apparent.

There’s a lot of work going on behind the scenes to streamline the curation process while continuing to provide personalized user support where needed. This work will allow us to continue scaling up the number of data packages we publish without compromising the attention each one receives.

We expect researchers will also appreciate the enhancements we are making to the data submission experience. We are particularly excited about the upcoming rollout of ORCiDs, which among other things will make it easier for coauthors to collaborate on data packages.

The reason why Dryad is in the business of archiving, preserving, and providing access to research data is so that it will be reused, whether for deeper reading of the publication, for post-publication review, for education, or for future research. While it’s not yet as easy as we would like to track data reuse, one metric that is straightforward to collect is the number of times a dataset has been downloaded, and this is one of two data reuse statistics reported by our friends at ImpactStory and Plum Analytics.

2014 with fireworks

The numbers are very encouraging. There are already over a quarter million downloads for the 8,897 data files released in 2014 (from 2,714 data packages). That’s over 28 downloads per data file. While there is always the caveat that some downloads may be due to activity from newly emerged bots that we have yet to recognize and filter out, we think it is safe to say that most of these downloads are from people.

To celebrate, we would like to pay special tribute to the top five data packages from 2014, as measured by the maximum number of downloads for any single file (since many data packages have more than one) at the time of writing. They cover a diversity of topics from livestock farming in the Paleolithic to phylogenetic relationships among insects. That said, we are struck by the impressively strong showing for plant science — 3 of the top 5 data packages.

In 5th place, with 453 downloads

In 4th place, with 581 downloads

In 3rd place, with 626 downloads

In 2nd place, with 4,672 downloads

And in 1st place, with a staggering 34,879 downloads

Remarkably, given the number of downloads, this last data package was only released in November.

We’d like to thank all of our users, whether you contribute data or reuse it (or both), for helping make science just a little more transparent, efficient, and robust this past year. And we are looking forward to finding out some more of what you did with all those downloads in 2015!

 

 

 

 

We are delighted to announce the integration of four new journals: Ecography, Journal of Avian Biology, Nordic Journal of Botany, and Oikos.

OIKOS_123_01_COVER.inddJABY_I_45_05_COVER:JABY_I_45_05_COVER.qxp.qxdNJBY_I_32_02_COVER.inddECOG_Issue Information.indd

The Nordic Society Oikos, which supports scientific research in ecology and related disciplines and to stimulate and enhance communication between stakeholders in ecological research in the Nordic countries and beyond, owns these journals, and is generously sponsoring Data Publication Charges on behalf of its authors. The Oikos Editorial Office, based in the Department of Biology at Lund University, manages the publication of these journals in partnership with Wiley. For all four journals, authors should submit the data to Dryad after the manuscript has been accepted.

Please see here for more information about how your journal can integrate manuscript and data submission to Dryad,

 

Dryad has been proud to support integrated data and manuscript submission for PLOS Biology since 2012, and for PLOS Genetics since 2013.  Yet there are over 400 data packages in Dryad from six difFeatured imageferent PLOS journals in addition to two research areas of PLOS Currents. Today, we are pleased to announce that we have expanded submission integration to cover all seven PLOS journals, including the two above plus PLOS Computational BiologyPLOS MedicinePLOS Neglected Tropical DiseasesPLOS ONE, and PLOS Pathogens.  

PLOS received a great deal of attention when they modified their Data Policy in March providing more guidance to authors on how and where to make their data available and introducing Data Availability Statements. Dryad’s integration process has been enhanced in a few ways to support this policy and also the needs of a megajournal like PLOS ONE.  We believe these modifications provide an attractive model for integration that other journals may wish to follow. The key difference for authors who wish to deposit data in Dryad is that you are now asked to deposit your data before submitting your manuscript.

  1. PLOS authors are now asked to provide a Data Availability Statement during initial manuscript submission, as shown in the screenshot below. There is evidence that introducing a Data Availability Statement greatly reinforces the effectiveness of a mandatory data archiving policy, and so we expect this change will substantially increase the availability of data for PLOS publications.  PLOS authors using Dryad are encouraged to provide the provisional Dryad DOI as part of the Data Availability Statement.
  2. PLOS authors are now also asked to provide a Data Review URL where reviewers can access the data, as shown in the second screenshot. While Dryad has offered secure, anonymous reviewer access for some time, the difference now is that PLOS authors using Dryad will be able to enter the Data Review URL  at the time of initial manuscript submission.
  3. In addition to these visible changes, we have also introduced an Application Programming Interface (API) to facilitate behind-the-scenes metadata exchange between the journal and the repository, making the process more reliable and scalable. This was critical for PLOS ONE, which published 31,500 articles in 2013.  Use of this API is now available as an integration option to all journals as an alternative to the existing email-based process, which we will continue to support.

PLOS Data Availability Statement interface

PLOS Data Review URL interface

The manuscript submission interface for PLOS now includes fields for a Data Availability Statement and a Data Review URL.

If you are planning to submit a manuscript but are unsure about the Dryad integration options or process for your journal, just consult this page. For all PLOS journals, the data are released by Dryad upon publication of the article.  Should the manuscript be rejected, the data files return to the author’s private workspace and the provisional DOI is not registered.  Authors are responsible for paying Data Publication Charges only if and when their manuscript is accepted.

Jennifer Lin from PLOS and Carly Strasser from the California Digital Library recently offered a set of community recommendations for ways that publishers could promote better access to research data:

  • Establish and enforce a mandatory data availability policy.
  • Contribute to establishing community standards for data management and sharing.
  • Contribute to establishing community standards for data preservation in trusted repositories.
  • Provide formal channels to share data.
  • Work with repositories to streamline data submission.
  • Require appropriate citation to all data associated with a publication—both produced and used.
  • Develop and report indicators that will support data as a first-class scholarly output.
  • Incentivize data sharing by promoting the value of data sharing.

Today’s expanded and enhanced integration with Dryad, which inaugurates the new Data Repository Integration Partner Program at PLOS, is an excellent illustration of how to put these recommendations into action.

We are happy to announce two new journals, Royal Society Open Science and Ecological Applications, that will be making it easy for authors to archive their data in Dryad through integration of manuscript and data submission.

RSOS_September cover_300x424

Royal Society Open Science is a new open access journal. It is the first title from The Royal Society that welcomes contributions from across science, engineering and mathematics, and the ninth to integrate with Dryad.  The Royal Society will sponsor the Data Publishing Charges on behalf of its authors.

EcologicalApplicationscover

Ecological Applications is the second integrated journal published by the Ecological Society of America, and it comes on the heels of  a strengthened data policy that came into force at the beginning of 2014.

For both journals, authors submit data to Dryad upon acceptance of the manuscript.  For a full list of integrated journals, with instructions for each one on when to submit, whether authors may elect to embargo their data, and whether Data Publishing Charges are sponsored, please see here.

Dryad welcomes submission integration with scientific journals irrespective of whether the organization is signed up for a payment plan or is a member of Dryad. The submission integration process works with many different online manuscript processing systems. It is lightweight and customizable to each journal’s needs. Please contact us if you would like to consider submission integration for your journal.

Molecular Ecology cover imageWe are pleased to report that Molecular Ecology is now the first journal to surpass 1000 data packages in Dryad! Our latest featured data package is the one that took Molecular Ecology past the goalposts:

  • Bolnick D, Snowberg L, Caporaso G, Lauber C, Knight R, Stutz W (2014) Major Histocompatibility Complex class IIb polymorphism influences gut microbiota composition and diversity. Molecular Ecology doi:10.1111/mec.12846
  • Bolnick D, Snowberg L, Stutz W, Caporaso G, Lauber C, Knight R (2014) Data from: Major Histocompatibility Complex class IIb polymorphism influences gut microbiota composition and diversity. Dryad Digital Repository doi:10.5061/dryad.2s07s

Why so many data packages from Molecular Ecology?  It is likely due to a few factors.  One, Molecular Ecology publishes a lot of papers (445 in 2012 according to Journal Citation Reports) and have had integrated data and manuscript submission with Dryad since 2010.  Two, the field works with many datatypes for which no specialized repository exists.  Three, Molecular Ecology not only began requiring data archiving in 2011 when it adopted the Joint Data Archiving Policy, but actually goes beyond JDAP by requiring a completed data availability statement in each article, something that managing editor Tim Vines and his colleagues have shown to be associated with very high rates of data archiving. Four, since Dryad introduced Data Publishing Charges, Molecular Ecology has been sponsoring those charges on behalf of its authors.

Other journals looking to support data archiving in their fields would do well to look at Molecular Ecology as a model.

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